James R. Green  PhD (Queen's), P.Eng., SMIEEE
Professor

Publications

orcid.org/0000-0002-6039-2355

Refereed journal publications

• [J66] Al-Najjar A, Amini M, Rajan S, Green JR, 2024, "Identifying Areas of High-risk Vegetation Encroachment on Electrical Powerlines using Mobile and Airborne Laser Scanned Point Clouds", IEEE Sensors Journal, in press, doi: 10.1109/JSEN.2023.3348785.
• [J65] Kehoe P, Gibb K, Hurley J, Langlois RG, Green JR, Chan ADC, Toma E, Aubertin C, Greenwood K, Ibey A, Redpath S, 2024, "Simulating whole-body vibration for neonatal patients on a tire-coupled road simulator", Proceedings of the Institution of Mechanical Engineers, Part H: Journal of Engineering in Medicine,238(2), doi:10.1177/09544119231219531.
• [J64] Ajila V, Colley L, Ste-Croix DT, Nissan N, Cober ER, Mimee B, Samanfar B, Green JR, 2023, "Species-specific MicroRNA Discovery and Target Prediction in the Soybean Cyst Nematode", Scientific Reports, 13:17657, doi:10.1038/s41598-023-44469-w.
• [J63] Souley Dosso Y, Greenwood K, Harrold J, Green JR, 2023, "Uncertainty Measurements in Non-Contact Neonatal Heart Rate Monitoring," IEEE Access, 11:144168-144179, doi:10.1109/ACCESS.2023.3343822.
• [J62] Klamrowski MM, Klein R, McCudden C, Green JR, Ramsay T, Rashidi B, White CA, Oliver MJ, Akbari A, Hundemer GL, 2023, "Short Timeframe Prediction of Kidney Failure among Patients with Advanced Chronic Kidney," Clinical Chemistry 69(10):1163–1173, doi:10.1093/clinchem/hvad112
• [J61] Nissan N, Hooker JC, Arezza E, Dick K, Golshani A, Mimee B, Cober ER, Green JR, Samanfar B, 2023, "Large-Scale Data Mining Pipeline for Identifying Novel Soybean Genes Involved in Resistance Against Soybean Cyst Nematode," Frontiers in Bioinformatics 3, doi:10.3389/fbinf.2023.1199675
• [J60] Kyrollos D, Fuller A, Greenwood K, Harrold J, Green JR, 2023, "Under the Cover Infant Pose Estimation using Multimodal Data," IEEE Transactions on Instrumentation and Measurement, 72:22686076, doi:10.1109/TIM.2023.3244220.
• [J59] Ajila V, Colley L, Ste-Croix DT, Nissan N, Golshani A, Cober ER, Mimee B, Samanfar B, Green JR, 2023, "P-TarPmiR accurately predicts plant-specific miRNA targets", Scientific Reports, 13:332, doi:10.1038/s41598-022-27283-8.
• [J58] Sharifisoraki Z, Dey A, Selzler R, Amini M, Green JR, Rajan S, Kwamena FA, 2022, "Monitoring Critical Infrastructure Using 3D LiDAR Point Clouds", IEEE Access, 11:314-336, doi: 10.1109/ACCESS.2022.3232338.
• [J57] Charih C, Green JR, 2022, "Audiogram Digitization Tool for Audiological Reports", IEEE Access, 10:110761-110769, doi: 10.1109/ACCESS.2022.3215972.
• [J56] Fuller A, Millard K, Green JR, 2022, "SatViT: Pretraining Transformers for Earth Observation," IEEE Geoscience and Remote Sensing Letters, 19:3513205, doi:10.1109/LGRS.2022.3201489.
• [J55] Dick K, Kyrollos DG, Cosoreanu ED, Dooley J, Fryer JS, Gordon SM, Kharbanda N, Klamrowski M, LaCasse PNL, Leung TF, Nasir MA, Qiu C, Robinson AS, Shao D, Siromahov BR, Starlight E, Tran C, Wang C, Yang Y-K, Green JR, 2022, "Reciprocal perspective as a super learner improves drug-target interaction prediction (MUSDTI)," Scientific Reports, 12:13237, doi:10.1038/s41598-022-16493-9.
• [J54] Souley Dosso Y, Kyrollos D, Greenwood K, Harrold J, Green JR, 2022, "NICUface: Robust Neonatal Face Detection in Complex NICU Scenes," IEEE Access, 10:62893-62909, doi:10.1109/ACCESS.2022.3181167.
• [J53] Charih F, Biggar KK, Green JR, 2022, "Assessing sequence-based protein-protein interaction predictors for use in therapeutic peptide engineering", Scientific Reports, 12:9610, doi:10.1038/s41598-022-13227-9.
• [J52] Dick K, Tanner JB, Charih F, Green JR, 2022, "GasBotty: Multi-Metric Extraction in the Wild," IEEE Access, 10:28487-28498, doi:10.1109/ACCESS.2022.3156578.
• [J51] Rurak GM, Simard S, Freitas-Andrade M, Lacoste B, Charih F, Van Geel A, Stead J, Woodside B, Green JR, Coppola G, Salmaso N, 2022, "Sex differences in developmental patterns of neocortical astroglia: A mouse translatome database", Cell Reports, 38(5):110310, doi:10.1016/j.celrep.2022.110310.
• [J50] Souley Dosso Y, Greenwood K, Harrold J, Green JR, 2021, "RGB-D Scene Analysis in the NICU," Elsevier Computers in Biology and Medicine, 138:104873, doi: 10.1016/j.compbiomed.2021.104873.
• [J49] Dick K, Hooker J, Nissan N, Pattang A, Sadowski M, Barnes B, Tan LH, Burnside D, Phanse S, Aoki H, Babu M, Dehne F, Golshani A, Cober ER, Green JR, Samanfar B, 2021, "Human-Soybean Allergies: Elucidation of the Seed Proteome & Comprehensive Protein-Protein Interaction Prediction," Journal of Proteome Research, 20(11):4925–4947, doi:10.1021/acs.jproteome.1c00138.
• [J48] Nizami S, McGregor AM C, Green JR, 2021, "Integrating Physiological Data Artifacts Detection With Clinical Decision Support Systems: Observational Study", JMIR Biomed Eng, 6(2):e23495, doi: 10.2196/23495.
• [J47] Dick K, Chopra A, Biggar KK, Green JR, 2021, "Multi-schema computational prediction of the comprehensive SARS-CoV-2 vs. human interactome", PeerJ, 9:e11117, doi:10.7717/peerj.11117.
• [J46] Wang RCC, Campbell DA, Green JR, Čuperlović-Culf M, 2021, "Automatic 1D 1H NMR Metabolite Quantification for Bioreactor Monitoring", Metabolites, 11(3):10.3390, doi:10.3390/metabo11030157.
• [J45] Charih F, Green JR, Biggar KK, 2020, "Machine Learning-Driven Identification of Novel Lysine Methylation Sites with MethySight", STAR Protocols, 1(3):100135, doi:10.1016/j.xpro.2020.100135.
• [J44] Kyrollos D, Reid B, Dick K, Green JR, 2020, "RPmirDIP: Reciprocal Perspective Improves miRNA Targeting Prediction", Scientific Reports, 10:11770, doi: 10.1038/s41598-020-68251-4.
• [J43] Biggar KK, Charih F, Liu H, Ruiz-Blanco YB, Stalker L, Chopra A, Connolly J, Adhikary H, Frensemier K, Hoekstra H, Galka M, Fang Q, Wynder C, Standford WL, Green JR, Li SS-C, 2020, "Proteome-wide Prediction of Lysine Methylation Leads to Identification of H2KB43 Methylation and Outlines the Potential of the Methyllysine Proteome", Cell Reports, Cell Reports, 32(2):107896, doi:10.1016/j.celrep.2020.107896.
• [J42] Lotfi Shahreza M, Ghadiri N, Green JR, 2020, "A computational drug repositioning method applied to rare diseases: Adrenocortical carcinoma," Scientific Reports, 10:8846, doi:10.1038/s41598-020-65658-x.
• [J41] Goswami I, Redpath S, Langlois RG, Green JR, Lee KS, Whyte HEA, 2020, "Whole-body vibration in neonatal transport: a review of current knowledge and future research challenges", Early Human Development, 146:105051, doi:10.1016/j.earlhumdev.2020.105051.
• [J40] Charih F, Bromwich M, Mark AE, Lefrançois R, Green JR, 2020, "Data-Driven Audiogram Classification for Mobile Audiometry", Scientific Reports, 10:3962, doi:10.1038/s41598-020-60898-3.
• [J39] Dick K, Samanfar B, Barnes B, Cober ER, Mimee B, Tan LH, Molnar SJ, Biggar KK, Golshani A, Dehne F, Green JR, 2020, "PIPE4: Fast PPI Predictor for Comprehensive Inter- and Cross-Species Interactomes", Scientific Reports, 10:1390, doi:10.5683/SP2/PVOTRN.
• [J38] Sheikh Hassani M, Green JR, 2019, "A Semi-Supervised Machine Learning Framework for MicroRNA Classification", BMC Human Genomics, 13-Sup1:43, doi:10.1186/s40246-019-0221-7.
• [J37] Sheikh Hassani M, Green JR, 2019, "Multi-view Co-training for microRNA Prediction", Scientific Reports, 9:10931, doi:10.1038/s41598-019-47399-8.
• [J36] Romero-Molina S, Ruiz-Blanco YB, Green JR, Sanchez-Garcia E, 2019, "ProtDCal-Suite: A web server for the numerical codification and functional analysis of proteins", Protein Science, 28(9):1734-1743 (doi: 10.1002/pro.3673).
• [J35] Peace RJ, Sheikh Hassani M, Green JR, 2019, "miPIE: NGS-based Prediction of miRNA Using Integrated Evidence", Scientific Reports, 9:1548, doi:10.1038/s41598-018-38107-z.
• [J34] Burnside D, Schoenrock A, Moteshareie H, Hooshyar M, Basra P, Hajikarimloo M, Dick K, Barnes B, Kazmirchuk T, Jessulat M, Pitre S, Samanfar B, Babu M, Green JR, Wong A, Dehne F, Biggar KK, Golshani A, 2019, "A robust computational tool for engineering synthetic binding proteins from random amino acid sequences," ISCIENCE 11:375-387, doi:10.1016/j.isci.2018.11.038.
• [J33] Grigg N, Schoenrock A, Dick K, Green JR, Golshani A, Wong A, Dehne F, Tsai EC, Biggar KK, 2019, "Insights into the suitability of utilizing brown rats (Rattus norvegicus) as a model for healing spinal cord injury with epidermal growth factor and fibroblast growth factor-II by predicting protein-protein interactions," Computers in Biology and Medicine, 104:220-226, doi:10.1016/j.compbiomed.2018.11.026.
• [J32] Dick K, Russell L, Souley Dosso Y, Kwamena F, Green JR, 2019, "Deep Learning for Critical Infrastructure Resilience", Journal of Infrastructure Systems, 25(2) doi:10.1061/(ASCE)IS.1943-555X.0000477.
• [J31] Dick K and Green JR, 2018, "Reciprocal Perspective for Improved Protein-Protein Interaction Prediction", Scientific Reports, 8(1):11694.
• [J30] Nizami S, Bekele A, Hozayen M, Greenwood K, Harrold J, Green JR, 2018, "Measuring uncertainty during respiratory rate estimation using pressure-sensitive mats," IEEE Transactions on Instrumentation and Measurement, 67(7):1535-42 (doi:10.1109/TIM.2018.2805154).
• [J29] Martínez-López Y, Barigye SJ, Martínez-Santiago O, Marrero-Ponce Y, Green JR, Castillo-Garit JA, 2017, "Prediction of aquatic toxicity of benzene derivatives using molecular descriptor from atomic weighted vectors," Environmental Toxicology and Pharmacology 56:314-321 (doi: 10.1016/j.etap.2017.10.006).
• [J28] Kazmirchuk T, Dick K, Burnside DJ, Barnes B, Moteshareie H, Hajikarimlou M, Omidi K, Ahmed D, Low A, Lettl C, Hooshyar M, Schoenrock A, Pitre S, Babu M, Cassol E, Samanfar B, Wong A, Dehne F, Green JR, Golshani A, 2017, "Designing Anti-Zika Virus Peptides Derived from Predicted Human-Zika Virus Protein-Protein Interactions," Computational Biology and Chemistry, 71:180-197 (doi:10.1016/j.compbiolchem.2017.10.011).
• [J27] Ruiz-Blanco YB, Agüero-Chapin G, García-Hernández E, Álvarez O, Antunes A, Green JR, 2017, "Exploring general-purpose protein features for distinguishing enzymes and non-enzymes within the twilight zone", BMC Bioinformatics, 18:349 (doi: 10.1186/s12859-017-1758-x)
• [J26] Lotfi Shahreza M, Ghadiri N, Mossavi SR, Varshosaz J, Green JR, 2017, "Heter-LP: A heterogeneous label propagation algorithm and its application in drug repositioning," Journal of Biomedical Informatics, 68:167-183, (doi:10.1016/j.jbi.2017.03.006).
• [J25] Schoenrock A, Burnside D, Moteshareie H, Pitre S, Hooshyar M, Green JR, Golshani A, Dehne F, Wong A, 2017, "Evolution of Protein-Protein Interaction Networks in Yeast," PLoS One 12(3): e0171920 (doi:10.1371/journal.pone.0171920).
• [J24] Lotfi Shahreza M, Ghadiri N, Mossavi SR, Varshosaz J, Green JR, 2017, "A review of network-based approaches to drug repositioning," Briefings in Bioinformatics, bbx017 (doi:10.1093/bib/bbx017).
• [J23] Ruiz-Blanco YB, Marrero-Ponce Y, García-Hernández E, Green JR, 2016, "Novel 'extended sequons' of Human N-glycosylation sites improve the precision of qualitative predictions: An alignment-free study of pattern recognition using ProtDCal protein features", Amino Acids, 49:317-325 (doi: 10.1007/s00726-016-2362-5)
• [J22] Peace RJ, Biggar KK, Storey KB, Green JR, 2015, "A Framework for Improving MicroRNA Prediction in Non-Human Genomes", Nucleic Acids Research, doi:10.1093/nar/gkv698.
• [J21] Ruiz-Blanco YB, Paz W, Green JR, Marrero-Ponce Y, 2015, "ProtDCal: A Program to Compute General-Purpose-Numerical Descriptors for Sequences and 3D-Structures of Proteins", BMC Bioinformatics, 16(1):162.
• [J20] Schoenrock A, Samanfar B, Pitre S, Hooshyar M, Jin K, Phillips CA, Wang H, Phanse S, Omidi K, Gui Y, Alamgir Md, Wong A, Barrenäs F, Babu M, Benson M, Langston MA, Green JR, Dehne F, Golshani A, 2014, "Efficient Prediction of Human Protein-Protein Interactions at a Global Scale", BMC Bioinformatics, 15:283.
• [J19] Ruiz-Blanco YB, Marrero-Ponce Y, García Y, Puris A, Bello R, Green JR, Sotomayor-Torres CM, 2014, "A physics-based scoring function for protein structural decoys: Dynamic testing on targets of CASP-ROLL", Chemical Physics Letters 610-611:135-140.
• [J18] Fraser GD, Chan ADC, Green JR, MacIsaac D, 2014, "Automated Biosignal Quality Analysis for Electromyography using a One-Class Support Vector Machine", IEEE Transactions in Instrumentation and Measurement, 63(12):2919-2930 (doi:10.1109/TIM.2014.2317296).
• [J17] Chao S, Green JR*, Smith JC*, 2014, "Evaluation of a GPGPU-based de novo peptide sequencing algorithm", Journal of Medical and Biological Engineering, 34(5): 461-468 (doi:10.5405/jmbe.1713). (*co-corresponding authors)
• [J16] Ghadiri A, Green JR, Marble AE, 2014, "Real-time Non-contact Optical Tongue Tracking", Journal of Medical and Biological Engineering, 34(5): 455-460 (doi:10.5405/jmbe.1712).
• [J15] Gagne R, Green JR, Dong H, Wade MG, Yauk CL, 2013, "Identification of Thyroid Hormone Receptor Binding Sites in Developing Mouse Cerebellum", BMC Genomics, 14:341 (doi:10.1186/1471-2164-14-341).
• [J14] Yuan MY, Green JR, Goubran RA, 2013, "Thermal Imaging for Assisted Living At Home: Improving Kitchen Safety", Journal of Medical and Biological Engineering, 33(4):380-387 ( doi:10.5405/jmbe.1271).
• [J13] Nizami S, Green JR, McGregor C, 2013, "Implementation of Artifact Detection in Critical Care: A Methodological Review", Reviews in Biomedical Engineering, 6:127-42 (doi:10.1109/RBME.2013.2243724)
• [J12] Pitre S, Hooshyar M, Schoenrock A, Samanfar B, Jessulat M, Green JR, Dehne F, Golshani A, 2012, "Short Co-occurring Polypeptide Regions Can Predict Global Protein Interaction Maps", Scientific Reports, 2:239.
• [J11] Jessulat M, Pitre S, Gui Y, Hooshyar M, Omidi O, Samanfar B, Tan LH, Alamgir Md, Green JR, Dehne F, Golshani A, 2011, "Recent Advances in Protein-Protein Interaction Prediction: Experimental and Computational Methods", Expert Opinion on Drug Discovery, 6(9):921-935 (doi:10.1517/17460441.2011.603722) (Review)
• [J10] Amos-Binks A, Patulea C, Pitre S, Schoenrock A, Gui Y, Green JR, Golshani A, Dehne F, 2011, "Binding Site Prediction for Protein-Protein Interactions and Novel Motif Discovery using Re-occurring Polypeptide Sequences", BMC Bioinformatics, 12:225. (This paper was designated as "Highly Accessed")
• [J9] Peace R, Mahmoud H, Green JR, 2011, "Exact String Matching For MS/MS Protein Identification Using the Cell Broadband Engine", Journal of Medical and Biological Engineering, 31(2), doi:10.5405/jmbe.824.
• [J8] Luo X, McKeague M, Pitre S, Dumontier M, Green JR, Golshani A, DeRosa M.C, Dehne F, 2010, "Computational Approaches Towards the Design of Pools for the in vitro Selection of Complex Aptamers", RNA 16:11, doi:10.1261/rna.2102210. (This paper was recommended by the Faculty of 1000)
• [J7] Green JR, Korenberg MJ, and Aboul-Magd Md, 2009, "MISO Dynamic Nonlinear Protein Secondary Structure Prediction", BMC Bioinformatics 10:222.
• [J6] Pitre S, North C, Alamgir Md, Jessulat M, Chan A, Luo X, Green JR, Dumontier M, Dehne F, Golshani A, 2008, "Global investigation of protein-protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences", Nucleic Acids Research 36(13):4286-4294.
• [J5] Pitre S, Alamgir Md, Green JR, Dumontier M, Dehne F, Golshani A, 2008, "Computational Methods for Predicting Protein-Protein Interactions", Adv Biochem Eng Biotechnol. 110:247-267. (Review)
• [J4] Green JR and Korenberg MJ, 2006, "On The Advantages of Multi-input Single-Output Parallel Cascade Classifiers", Ann. Biomed. Eng., 34(4):709-716.
• [J3] Green JR, Korenberg MJ, David R, Hunter I, 2003, "Recognition of Adenosine Triphosphate Binding Sites Using Parallel Cascade System Identification", Ann. Biomed. Eng. 31(4):462-470.
• [J2] Bushel PR, Hamadeh HK, Bennett L, Green JR, Ableson A, Misener S, Afshari C.A, Paules R.S, 2003, "Computational Selection of Distinct Class- and Subclass-Specific Toxicant Gene Expression Signatures", J. Biomed. Info. 35(3):160-170.
• [J1] Korenberg MJ, Lipson E, Green JR, Solomon JE, 2002, "Parallel Cascade Recognition of Exon and Intron DNA Sequences", Ann. Biomed. Eng. 30(1):129-140.

Book Chapters

• [B2] Shahreza ML, Ghadiri N, Green JR, 2019, "Heter-LP: A heterogeneous label propagation method for drug repositioning," in: Vanhaelen Q. (eds) Computational Methods for Drug Repurposing. Methods in Molecular Biology, vol 1903. Humana Press, New York, NY, (DOI:10.1007/978-1-4939-8955-3_18)
• [B1] Peace RJ and Green JR, 2018, "Computational Sequence- and NGS-based MicroRNA Prediction" in Signal Processing and Machine Learning for Biomedical Big Data, edited by Sejdic E and Falk TH, CRC Press, Boca Raton, (DOI:10.1201/9781351061223)

Patents

• [PP2] Giffen PR, Green JR, Nizami S, inventors; IBM, assignee. "Detecting Quality of Physiologic Data Using Contact Pressure Data for Alarm Generation," US Patent Number 10,297,143 B1. Issued 21 May 2019.
• [PP1] Kotlyar M, Ableson A, Green J, Somogyi R, Steeg E, inventors; Molecular Mining Corp, assignee. "Determination of Co-occurrences of Attributes," International Patent Application No. PCT/CA02/00731 (International Patent Publication No. WO 02/095650). Filed May 17, 2002.

Refereed conference publications

• [C103] Fuller A, Millard K, Green JR, "CROMA: Remote Sensing Representations with Contrastive Radar-Optical Masked Autoencoders", NeurIPS 2023, New Orleans, 12-14 Dec 2023. Acceptance rate of 26.1%
• [C102] Ajila V, Green JR, "Domain Adaptation applied to microRNA Target Prediction", IEEE International Conference on BioInformatics and BioEngineering (BIBE), virtual, 2-6 Dec 2023.
• [C101] Huq S, Xi P, Goubran RA, Knoefel F, Green JR, "Data Augmentation using Reverb and Noise in Deep Learning Implementation of Cough Classification", IEEE International Conference on BioInformatics and BioEngineering (BIBE), virtual, 2-6 Dec 2023.
• [C100] Masson P, Wallace B, Green JR, Goubran RA, "Comparison of Spatial Coverage of LiDAR Systems for In Home Activity of Daily Living Applications", IEEE Sensors Application Symposium (SAS2023), Ottawa, Canada, 18-20 July 2023.
• [C99] Zhang Z, Shen Y, Valdes JJ, Huq S, Wallace B, Green JR, Xi P, Goubran RA, "Domestic Sound Classification with Deep Learning", IEEE Sensors Application Symposium (SAS2023), Ottawa, Canada, 18-20 July 2023.
• [C98] Singh A, Rajan S, Amini M, Green JR, Dick K, "Critical Electrical Infrastructure Segmentation in Arctic Conditions", IEEE Sensors Application Symposium (SAS2023), Ottawa, Canada, 18-20 July 2023.
• [C97] Stewart M, Higginson C, Lariviere-Chartier J, Robillard R, Green JR, Goubran RA, Knoefel F, "Fusion in Automated Sleep Apnea Classification Using Multi-Input Convolutional Neural Networks", IEEE Sensors Application Symposium (SAS2023), Ottawa, Canada, 18-20 July 2023.
• [C96] Gibb K, Yovchev N, Aubertin C, Greenwood K, Redpath S, Ibey A, Chan ADCC, Green JR, Langlois R, "Developing an Instrumentation Package to Measure Noise and Vibration in Neonatal Patient Transport", IEEE International Symposium on Medical Measurements and Applications (MeMeA), Jeju, South Korea, 14-16 June 2023.
• [C95] Huq S, Xi P, Goubran RA, Valdes J, Knoefel F, Green JR, "Data Augmentation using Reverb and Noise in Deep Learning Implementation of Cough Classification", IEEE International Symposium on Medical Measurements and Applications (MeMeA), Jeju, South Korea, 14-16 June 2023.
• [C94] Mozafari M, Law A, Green JR, Goubran RA, "Face Detection in Thermal Images with Improved Spatial Precision and Temporal Stability", IEEE International Instrumentation and Measurement Technology Conference - I2MTC2023, Kuala Lumpur, Malaysia, 22-25 May 2023.
• [C93] Abbasi H, Dey A, Lam I, Sharifisoraki Z, Ali E, Amini M, Rajan S, Green JR, Kwamena F, 2023, "A Step-By-Step Approach for Camera and Low-Resolution-3D-LiDAR Calibration", IEEE International Conference on Consumer Electronics (ICCE), Las Vegas, NV, 6-8 Jan 2023.
• [C92] Dick K, Green JR, "Emergence of an Autonomous Vehicle Secondary Data Market for Breakthrough Applications", BSD 2022 workshop within IEEE BigData 2022, Tokyo, Japan , 17-20 Dec 2022.
• [C91] Souley Dosso Y, Greenwood K, Harrold J, Green JR, "Depth Encoding for Neonatal Patient Segmentation”, IEEE BIBM 2022 workshop MABM 2022, Las Vegas, NV, 6-8 Dec 2022.
• [C90] Souley Dosso Y, Rizcallah E, Kwamena F, Goubran RA, Green JR, "Deep Learning for Segmentation of Critical Electrical Infrastructure from Vehicle-Based Images”, IEEE EPEC 2022, Victoria, BC , 5-7 Dec 2022.
• [C89] Hajj-Ali Z, Greenwood K, Harrold J, Green JR, "Towards Depth-based Respiratory Rate Estimation with Arbitrary Camera Placement", IEEE International Symposium on Medical Measurements and Applications (MeMeA), Giardini Naxos-Taormina, Italy, 22-24 June 2022.
• [C88] Kyrollos D, Greenwood K, Harrold J, Green JR, "Transfer Learning Approaches for Neonate Head Localization from Pressure Images", IEEE International Symposium on Medical Measurements and Applications (MeMeA), Giardini Naxos-Taormina, Italy, 22-24 June 2022.
• [C87] Kehoe P, Gibb K, Hurley J, Aubertin C, Greenwood K, Ibey A, Redpath S, Chan ADC, Green JR, Langlois R, "Vibration Profiles of a Road Ambulance Using Equivalent Acceleration", Canadian Society for Mechanical Engineering International Congress - CSME 2022, Edmonton, Canada, 5-8 June 2022.
• [C86] Hurley J, Kehoe P, Gibb K, Aubertin C, Greenwood K, Ibey A, Redpath S, Chan ADC, Green JR, Langlois R, "Development of Dedicated Transport Isolette Vibration Test Aparatus", Canadian Society for Mechanical Engineering International Congress - CSME 2022, Edmonton, Canada, 5-8 June 2022.
• [C85] Gibb K, Kehoe P, Hurley J, Aubertin C, Greenwood K, Ibey A, Redpath S, Chan ADC, Green JR, Langlois R, "Developing a Dynamic Model of the Standard Neonatal Patient Transport System using Lagrange’s Equation in the Pitch Plane", Canadian Society for Mechanical Engineering International Congress - CSME 2022, Edmonton, Canada, 5-8 June 2022.
• [C84] Gibb K, Kehoe P, Hurley J, Aubertin C, Greenwood K, Ibey A, Redpath S, Chan ADC, Green JR, Langlois R, "Dynamic Modeling of the Standard Neonatal Patient Transport System using a Newton-Euler Based Formulation in the Roll Plane", 9th International Conference of Control, Dynamic Systems, and Robotics - CDSR22, Niagara Falls, Canada, 2-4 June 2022.
• [C83] Tanner J, Dick K, Green JR, "Inter- & Intra-City Image Geolocalization", Conference on Robots and Vision - CRV2022, Toronto, Ontario, 30 May - 2 June 2022.
• [C82] Mozafari M, Law A, Green JR, Goubran RA, "Respiration Rate Estimation from Thermal Video of Masked and Unmasked Individuals Using Tensor Decomposition", IEEE International Instrumentation and Measurement Technology Conference - I2MTC2022, Ottawa, Canada, 16-19 May 2022.
• [C81] Mozafari M, Law A, Béni Tchoudem Djouaka S, Green JR, Goubran RA, "Comparison of Blind Source Separation Techniques for Respiration Rate Estimation from Depth Video", IEEE International Instrumentation and Measurement Technology Conference - I2MTC2022, Ottawa, Canada, 16-19 May 2022.
• [C80] Kyrollos D, Green JR, "MetaHate: A Meta-Model for Hate Speech Detection", IEEE Big Data DEVIANCE 2021: Workshop on Deviant Activities on Social Media, Orlando, FL (virtual), 15-18 Dec 2021.
• [C79] Souley Dosso Y, Greenwood K, Harrold J, Green JR, "Bottle-Feeding Intervention Detection in the NICU", IEEE Engineering in Medicine and Biology Conference - EMBC 2021, Guadalajara, Mexico (virtual), 1-5 Nov 2021.
• [C78] Purohit A, Acharya S, Green JR, "A novel Greedy approach for Sequence based Computational prediction of Binding-Sites in Protein-Protein Interaction", IEEE 21st International Conference on Bioinformatics and Bioengineering - BIBE2021, Kragujevac, Serbia (virtual), 25-27 Oct. 2021.
• [C77] Dick K, Kyrollos D, Green JR, "Machine Learning Pedagogy to Support the Research Community", ACM SIGPLAN conference on Systems, Programming, Languages, and Applications: Software for Humanity (SPLASH-E ’21), Chicago, IL (virtual), 20 Oct 2021.
• [C76] Mozafari M, Goubran RA, Green JR, "A Fusion Model for Cross-Subject Stress Level Detection Based on Transfer Learning", Sensors Applications Symposium (SAS), Sundsvall, Sweden (virtual), 23-25 Aug 2021.
• [C75] Kyrollos D, Greenwood K, Harrold J, Green JR, "Detection of False Alarms in the NICU Using Pressure Sensitive Mat", Sensors Applications Symposium (SAS), Sundsvall, Sweden (virtual), 23-25 Aug 2021.
• [C74] Kyrollos D, Tanner JB, Greenwood K, Harrold J, Green JR, "Noncontact Neonatal Respiration Rate Estimation Using Machine Vision", Sensors Applications Symposium (SAS), Sundsvall, Sweden (virtual), 23-25 Aug 2021.
• [C73] Souley Dosso Y, Selzler R, Greenwood K, Harrold J, Green JR, "RGB-D Sensor Application for Non-Contact Neonatal Monitoring", Sensors Applications Symposium (SAS), Sundsvall, Sweden (virtual), 23-25 Aug 2021.
• [C72] Selzler R, Chan ADC, Green JR, "TSEA: An Open Source Python-Based Annotation Tool for Time Series Data", IEEE International Symposium on Medical Measurements and Applications (MeMeA), Neuchatel, Switzerland (virtual), 23-25 June 2021.
• [C71] Selzler R, Chan ADC, Green JR, "Impact of Subject-specific Training Data in Anxiety Level Classification from Physiologic Data", IEEE International Symposium on Medical Measurements and Applications (MeMeA), Neuchatel, Switzerland (virtual), 23-25 June 2021.
• [C70] Darwaish F, Redpath S, Greenwood K, Aubertin C, Ibey A, Chan ADC, Green JR, Langlois RG, "Characterizing On-Road Vibrations in Ontario’s Neonatal Patient Transport", IEEE International Symposium on Medical Measurements and Applications (MeMeA), Neuchatel, Switzerland (virtual), 23-25 June 2021.
• [C69] Dick K, Tanner J, Green JR, "To Keystone or Not to Keystone, that is the Correction", Conference on Robots and Vision - CRV2020, Vancouver, Canada (virtual), 25-28 May 2021.
• [C68] Kyrollos D, Hassan R, Souley Dosso Y, Green JR, "Fusing Pressure-Sensitive Mat Data with Video through Multi-Modal Registration", IEEE International Instrumentation and Measurement Technology Conference - I2MTC2021, Glasgow, Scotland (virtual), 17-20 May 2021.
• [C67] Cohen-McFarlane M, Dick K, Green JR, Goubran RA, "Chaos Game Representation of Audio Signals", IEEE International Instrumentation and Measurement Technology Conference - I2MTC2021, Glasgow, Scotland (virtual), 17-20 May 2021.
• [C66] Kyrollos D, Stachiw T, Green JR, Langlois RG, "Injury Risk and Comfort Assessment Applied to Ambulance Transportation", 7th International Conference of Control Systems, and Robotics (CDSR'20), Niagara Falls, ON (virtual), 9-11 Nov 2020, doi: 10.11159/cdsr20.156.
• [C65] Dick K, Green JR, "Chaos Game Representations and Deep Learning for Proteome-wide Protein Prediction", IEEE 20th International Conference on Bioinformatics and Bioengineering - BIBE2020, Cincinnati, OH (virtual), 26-28 Oct. 2020.
• [C64] Souley Dosso Y, Aziz S, Nizami S, Aubertin C, Greenwood K, Harrold J, Green JR, "Video-based Neonatal Motion Detection", IEEE Engineering in Medicine and Biology Conference - EMBC 2020, Montreal, Quebec (virtual), 20-24 July 2020.
• [C63] Darwaish F, Selzler R, Law A, Chen E, Ibey A, Aubertin C, Greenwood K, Redpath S, Chan ADC, Green JR, Langlois RG, "Preliminary Laboratory Vibration Testing of a Complete Neonatal Patient Transport System", IEEE Engineering in Medicine and Biology Conference - EMBC 2020, Montreal, Quebec (virtual), 20-24 July 2020.
• [C62] Selzler R, Smith A, Charih F, Boyle A, Holly J, Bridgewater C, Besemann M, Curan D, Chan ADC, Green JR, "Exploratory Analysis of Ultra-Short-Term Heart Rate Variability Features in Virtual Rehabilitation Sessions," IEEE International Symposium on Medical Measurements and Applications (MeMeA), Bari, Italy (virtual), 1-3 June 2020.
• [C61] Aziz S, Souley Dosso Y, Nizami S, Greenwood K, Harrold J, Green JR, "Detection of Neonatal Patient Motion Using a Pressure-Sensitive Mat," IEEE International Symposium on Medical Measurements and Applications (MeMeA), Bari, Italy (virtual), 1-3 June 2020.
(Received the IEEE MeMeA "Best Student Paper" award)
• [C60] Souley Dosso Y, Aziz S, Nizami S, Greenwood K, Harrold J, Green JR, "Neonatal Face Tracking for Non-Contact Continuous Patient Monitoring," IEEE International Symposium on Medical Measurements and Applications (MeMeA), Bari, Italy (virtual), 1-3 June 2020.
• [C59] Dick K, Charih F, Woo J, Green JR, "Gas Prices of America: The Machine-Augmented Crowd-Sourcing Era", Conference on Robots and Vision - CRV2020, Ottawa, Ontario, 13-15 May 2020.
• [C58] Green JR, Langlois R, Chan A, Selzler R, Darwaish F, Ibey A, Aubertin C, Greenwood K, Redpath S, "Investigating Vibration Levels in a Neonatal Transport System", Can Med Biol Eng Conf (CMBEC42), Ottawa, 21-24 May 2019.
• [C57] Hozayen H, Nizami S, Bekele A, Dick K, Green JR, "Developing a Real-Time Patient Monitor Data Import System", National Conference on Undergraduate Research (NCUR2018), Edmond, Oklahoma, 4-7 Apr 2018.
• [C56] Sheikh Hassani M, Green JR, "Active Learning for microRNA Prediction", IEEE International Conference on Bioinformatics and Biomedicine - BIBM2018, Madrid, Spain, 3-6 Dec 2018.
• [C55] Bekele A, Samuel J, Nizami S, Basharat A, Giffen PR, Green JR, "Ontology Driven Temporal Event Annotator mHealth Application Framework," CASCON 2018, Markham, Canada, 29-31 October 2018.
• [C54] Dick K, Green JR, "Fitting Rank Order Data in the Age of Context", IEEE Life Sciences Conference 2018, Montreal, Quebec, 28-30 Oct 2018.
• [C53] Souley Dosso Y, Bekele A, Nizami S, Aubertin C, Greenwood K, Harrold J, Green JR, "Segmentation of Patient Images in the Neonatal Intensive Care Unit", IEEE Life Sciences Conference 2018, Montreal, Quebec, 28-30 Oct 2018.
• [C52] Charih F, Steeves A, Bromwich M, Mark AE, Lefrançois R, Green JR, "Applications of Machine Learning Methods in Retrospective Studies on Hearing", IEEE Life Sciences Conference 2018, Montreal, Quebec, 28-30 Oct 2018.
• [C51] Selzler R, Green JR, Goubran RA, "Neurodegenerative Disease Prediction Based on Gait Analysis Signals Acquired with Force-Sensitive Resistors", IEEE Life Sciences Conference 2018, Montreal, Quebec, 28-30 Oct 2018.
• [C50] Oommen J, Bews D, Sheikh Hassani M, Ono Y, Green JR, "A Wearable Electronic Swim Coach for Blind Athletes", IEEE Life Sciences Conference 2018, Montreal, Quebec, 28-30 Oct 2018.
• [C49] Souley Dosso Y, Bekele A, Green JR, "Eulerian Magnification of Multi-Modal RGB-D Video for Heart Rate Estimation," IEEE International Symposium on Medical Measurements and Applications (MeMeA), Rome, Italy, 11-13 May 2018. Awarded the IEEE MeMeA "Women in Engineering Best Paper"
• [C48] Selzler R, Aubertin C, Greenwood K, MacLean G, Redpath S, Green JR, "Measurement of Vibration Levels on Neonatal Transport Systems Using a Custom Data Logger," IEEE International Symposium on Medical Measurements and Applications (MeMeA), Rome, Italy, 11-13 May 2018.
• [C47] Charih F, Bromwich M, Lefrancois R, Mark A, Green JR, "Mining Audiograms to Improve the Interpretability of Automated Audiometry Measurements," IEEE International Symposium on Medical Measurements and Applications (MeMeA), Rome, Italy, 11-13 May 2018.
• [C46] Bekele A, Nizami S, Souley Dosso Y, Aubertin C, Greenwood K, Harrold J, Green JR, "Real-time Neonatal Respiratory Rate Estimation using a Pressure-Sensitive Mat," IEEE International Symposium on Medical Measurements and Applications (MeMeA), Rome, Italy, 11-13 May 2018.
• [C45] Nizami S, Basharat A, Shaukat A, Hameed U, Raza SA, Bekele A, Giffen PR, Green JR, "CEA: Clinical Event Annotator mHealth Application for Real-time Patient Monitoring," IEEE 40th International Engineering in Medicine and Biology Conference (EMBC2018), Honolulu, HI, USA, 17-21 July 2018.
• [C44] Dick K, Charih F, Souley Dosso Y, Russell L, Green JR, "Systematic Street View Sampling: High Quality Annotation of Power Infrastructure in Rural Ontario", Conference on Robots and Vision - CRV2018, Toronto, Ontario, 8-11 May 2018.
• [C43] Selzler R, Green JR, Goubran RA, Knoefel F, "Pressure sensitive mat using proximity sensors for vital sign monitoring", IEEE International Instrumentation and Measurement Technology Conference, Houston, Texas, 14-17 May 2018.
• [C42] Dick K, Dehne F, Golshani A, Green JR, "Positome: A method for improving protein-protein interaction quality and prediction accuracy", IEEE CIBCB 2017, Manchester, United Kingdom, Aug 2017, (doi:10.1109/CIBCB.2017.8058545).
• [C41] Nizami S, Bekele A, Hozayen M, Greenwood K, Harrold J, Green JR, "Comparing time and frequency domain estimation of neonatal respiratory rate using pressure-sensitive mats," IEEE International Symposium on Medical Measurements and Applications (MeMeA), Rochester, MN, USA, 7-10 May 2017. Awarded the IEEE MeMeA "Women in Engineering Best Paper"
• [C40] Nizami S, Cohen-McFarlane M, Green JR, Goubran RA, "Comparing metrological properties of pressure-sensitive mats for continuous patient monitoring," 2017 IEEE Sensors Applications Symposium, Glassboro, New Jersey, 13-15 March 2017.
• [C39] Cohen-McFarlane M, Green JR, Goubran RA, Knoefel F, "Smart Monitoring of Fluid Intake and Bladder Voiding using Pressure Sensitive Mats", 37th Annual International Conference of the IEEE-EMBS (EMBC), Orlando, Florida, 16-20 Aug 2016.
• [C38] Dick K, Green JR, "Comparison of Sequence- and Structure-Based Protein-Protein Interaction Sites", IEEE EMBS ISC 2016, Ottawa, Canada, May 2016.
• [C37] Barnes B, Karimloo M, Schoenrock A, Burnside D, Cassol E, Wong A, Dehne F, Golshani A, Green JR, "Predicting Novel Protein-Protein Interactions Between the HIV-1 Virus and Homo Sapiens", IEEE EMBS ISC 2016, Ottawa, Canada, May 2016. (Awarded 3rd Prize in Student Paper Competition)
• [C36] Cohen-McFarlane M, Green JR, Goubran RA, Knoefel F, "Monitoring Congestive Heart Failure using Pressure-Sensitive Mats", IEEE International Symposium on Medical Measurements and Applications (MeMeA), Benevento, Italy, 15-18 May 2016.
• [C35] Cohen-McFarlane M, Green JR, Goubran RA, Knoefel F, "Characterization of Measurements from Pressure Sensitive Mats using an Anthropomorphic Body Model", IEEE International Instrumentation and Measurement Technology Conference, Taipei, Taiwan, 23-26 May 2016.
• [C34] Schoenrock A, Burnside D, Moteshareie H, Green JR, Wong A, Golshani A, Dehne F, "Engineering Inhibitory Proteins with InSiPS: The In-Silico Protein Synthesizer", Supercomputing 2015, Austin, Texas, Nov 2015.
• [C33] Nizami S, Green JR, McGregor C, "An Artifact Detection Framework for Clinical Decision Support Systems", World Congress on Medical Physics & Biomedical Engineering, Toronto, Canada, June 2015.
• [C32] Peace RJ, Green JR, "Updated Free Energy Parameters Increase MicroRNA Prediction Performance", World Congress on Medical Physics & Biomedical Engineering, Toronto, Canada, June 2015.
• [C31] Moradshahi P, Green JR, Lemair E.D, Baddour, N, "Differentiating Two Daily Activities Through Analysis of Short Ambulatory Video Clips", IEEE International Symposium on Medical Measurements and Applications, Gatineau, Canada, May 2013.
• [C30] Fraser GD, Chan ADC, Green JR, MacIsaac D, "Biosignal Quality Analysis of Surface EMG using a Correlation Coefficient Test for Normality", IEEE International Symposium on Medical Measurements and Applications, Gatineau, Canada, May 2013.
• [C29] Chao S, Green JR, Smith J.C, "De Novo Peptide Sequencing Using General-Purpose Computing On a Graphics Processing Unit", 36th Conference of the Canadian Medical & Biological Engineering Society, Ottawa, Canada, May 2013. (Awarded 2nd Prize in Student Paper Competition)
• [C28] Amos-Binks AR, Green JR, "Calibration Interface for the Electronic Swim Coach", 36th Conference of the Canadian Medical & Biological Engineering Society, Ottawa, Canada, May 2013.
• [C27] Ghadiri A, Green JR, Marble AE, "Using Local Binary Patterns for Non-Contact Optical Tongue Tracking", 36th Conference of the Canadian Medical & Biological Engineering Society, Ottawa, Canada, May 2013.
• [C26] Miyata C, Greiss R, Green JR, Ryan J, "RUTalking2Me? An Assistive Device Combining Beamforming And Speech Recognition", 36th Conference of the Canadian Medical & Biological Engineering Society, Ottawa, Canada, May 2013.
• [C25] Abser N, MacIsaac D, Chan ADC, Fraser G.D, Green JR, "CleanEMG: Comparing interpolation strategies for power line interference quantification in surface EMG signals", 35th Conference of the Canadian Medical & Biological Engineering Society, Halifax, Canada, 2012.
• [C24] Fraser G.D, Chan ADC, Green JR, MacIsaac D, "Detection of ADC clipping, quantization noise, and amplifier saturation in surface electromyography", IEEE International Symposium on Medical Measurements and Applications, pp. 162-166, Budapest, Hungary, 2012.
• [C23] Fraser G.D, Chan ADC, Green JR, MacIsaac D, "Removal of electrocardiogram artifacts in surface electromyography using a moving average method", IEEE International Symposium on Medical Measurements and Applications, Budapest, Hungary, pp. 128-131, 2012.
• [C22] Iyuke, F, Green, JR, Willmore, W, "Active learning for the prediction of asparagine/aspartate hydroxylation sites on proteins", Computation Intelligence and Bioinformatics (CIB2011), Pittsburgh PA, 7-9 Nov 2011.
• [C21] Nizami, S, Green, JR, McGregor, C, "Service oriented architecture to support real-time implementation of artifact detection in critical care monitoring.", 32nd Annual International Conference of the IEEE-EMBS (EMBC), Boston MA, USA, 2011.
• [C20] Fraser G.D, Chan ADC, Green JR, Abser N, MacIsaac D, "CleanEMG - Power line inteference estimation in sEMG using an adaptive least squares algorithm", 32nd Annual International Conference of the IEEE-EMBS (EMBC), Boston MA, USA, 2011.
• [C19] Abser N, MacIsaac D, Fraser G, Chan ADC, Green JR, "CleanEMG: Quantifying power line interference in surface EMG signals", 34th Conference of the Canadian Medical & Biological Engineering Society and Festival of International Conferences on Caregiving, Disability, Aging and Technology, Toronto, Canada, 69825, pp. 1-4, 2011.
• [C18] Schoenrock, A, Dehne, F, Green, JR, Golshani, A, Pitre, S, "MP-PIPE: A Massively Parallel Protein-Protein Interaction Prediction Engine", International Conference on Supercomputing (ICS'11), Tuscon AZ, USA, May 31-June 4, 11 pages, 2011.
• [C17] Patulea, C, Peace, R, Green, JR, "CUDA-accelerated Genetic Feedforward-ANN Training for Data Mining", HPCS2010, Toronto ON, 5-9 June 2010.
• [C16] Peace, R, Mahmoud, H, Green, JR, "Exact String Matching For MS/MS Protein Identification Using the Cell Broadband Engine", CMBEC33, Vancouver BC, 15-18 June 2010.
• [C15] Walia, M, Lukmanji, T, Farrell, R, Green, JR, "Towards Development of a Robotic Guide Dog", CMBEC33, Vancouver BC, 15-18 June 2010.
• [C14] Salehi-Abari, O, Alaca, F, Green, JR, Goubran, R, "Application Of Sensor Networks In A Smart Apartment", CMBEC33, Vancouver BC, 15-18 June 2010.
• [C13] Peace, R, Stewart, T, Green, JR, Smith, J, "Analysis of Redundant Peaks in LC-MS/MS Datasets", IEEE International Workshop on Medical Measurements and Applications (MeMeA), Ottawa, 30 April-1 May 2010.
• [C12] Nizami, S, Green, JR, Eklund, J.M, McGregor, C, "Heart Disease Classification through HRV Analysis Using Parallel Cascade Identification and Fast Orthogonal Search", IEEE International Workshop on Medical Measurements and Applications (MeMeA), Ottawa, 30 April-1 May 2010.
• [C11] Wetherow, O, Green, JR, Chan, ADC, Golshani, A, "Plate Analyzer - A Yeast Colony Size Measurement System", IEEE International Workshop on Medical Measurements and Applications (MeMeA), Ottawa, 30 April-1 May 2010.
• [C10] Green, JR, Mahmoud, H, Dumontier, M, "Modeling Tryptic Digestion on the Cell BE Processor", CCECE09, St. John's NFLD, 3-6 May 2009.
• [C9] Yuan, M.Y, Green, JR, Goubran, R, "Stove Top Thermal Monitoring For Assisted Living At Home", CMBEC31, Montreal, 10-13 June 2008.
• [C8] Chan, ADC. and Green, JR, "Smart Rollator Prototype", MeMeA 2008, Ottawa, 8-9 May, p97-100, 2008.
• [C7] Aboul-Magd, Md. and Green, JR, "PCI-SS: Web-Based Human and Machine Interfaces to Protein Secondary Structure Prediction", CCECE08, Niagara Falls, Ontario, 4-7 May, 2008.
• [C6] Sadeghian, A, Yim, CH, Chan, ADC, Green, JR, "Eye-Interact: A Low-Cost Eye Movement Controlled Communication System", CMBEC30, Toronto, 16-19 June 2007.
• [C5] Mulligan, K, LaRocque, J, Green, JR, "A Low Cost Non-Contact Approach to Tongue Tracking for Special Needs Children", CMBEC30, Toronto, 16-19 June 2007.
• [C4] Green, JR, Dmochowski, GM, Golshani, A, "Prediction of Protein Sumoylation Sites Via Parallel Cascade Identification", CMBEC29, Vancouver, 1-3 June 2006.
• [C3] Green, JR and Korenberg, MJ, "Nonlinear System Identification Provides Insight Into Protein Folding", CCECE06, Ottawa, Ontario, 7-10 May, 2006.
• [C2] Bushel, P.R, Bennett, L, Hamadeh, H, Green, J, Ableson, A, Misener, S, Paules, R, Afshari, C, 2002, "Gene expression pattern recognition algorithm inferences to classify samples exposed to chemical agents", Proc. SPIE Int. Soc. Opt. Eng. 4623: 85-93.
• [C1] Green, JR, 1997, "An Analysis of Human Factors in Motor Vehicle Accident Investigations", Proceedings of the Tenth Canadian Multi-Disciplinary Road Safety Conference, Toronto, 9-11 June 1997.

Non-refereed technical papers

• [T11] Souley Dosso Y, Green JR, Goubran RA, 2023, “Multi-Sensor Applications to Address Critical Electricity Infrastructure Vulnerabilities - Academic Landscape Survey”, prepared for Natural Resources Canada, Energy Infrastructure Security Division, 45 pages.
• [T10] Stone E, Pilanku V, Umeshbhai Khatri D, Green JR, Wallace B, Foss, A, 2023, “An Overview of Canadian Industry Activity to Address Emerging Vulnerabilities to Critical Electrical Infrastructure”, prepared for Natural Resources Canada, Energy Infrastructure Security Division, 63 pages.
• [T9] Rajan S, Abbasi H, Dey A, Lam I, Sharifisoraki Z, Ali E, Amini M, Green JR, 2022, "Creating a Multi-modal Sensor Data Resource of Canadian Critical Electrical Infrastructure", prepared for Natural Resources Canada, Energy Infrastructure Security Division, 38 pages.
• [T8] Amini M, Sharifisoraki Z, Ali E, Abbasi H, Dey A, Lam I, Rajan S, Green JR, 2022, "Segmentation Algorithms for Multi-modal Monitoring of Critical Electrical Infrastructure", prepared for Natural Resources Canada, Energy Infrastructure Security Division, 42 pages.
• [T7] Amini M, Dey A, Green JR, Rajan S, Selzler R, Sharifisoraki Z, 2021, "Monitoring Critical Infrastructure using 3D LiDAR", prepared for Natural Resources Canada, Energy Infrastructure Security Division, 67 pages.
• [T6] Dick K, Biggar KK, Green JR, 2020, "Computational Prediction of the Comprehensive SARS-CoV-2 vs. Human Interactome to Guide the Design of Therapeutics", bioRxiv 2020.03.29.014381, doi:10.1101/2020.03.29.014381. (published in Peerj as [J47])
• [T5] Dick K, Charih F, Russell L, Souley Dosso Y, Green JR, 2018, "Towards Energy Infrastructure Image Segmentation Using Deep Learning", prepared for Natural Resources Canada, Energy Infrastructure Security Division, 88 pages.
• [T4] Dick K, Russell L, Souley Dosso Y, Green JR, 2017, "Deep Learning for Identifying Threats to Critical Infrastructure", prepared for Natural Resources Canada, Energy Infrastructure Security Division, 68 pages.
• [T3] Greiss R, Green JR, Goubran RA, 2016, "Acoustic Noise Management in Open Plan Offices for Critical Infrastructure Security", prepared for Natural Resources Canada, Energy Infrastructure Security Division, 52 pages.
• [T2] Peace R, Green JR, 2012, "Final Report on Semantic Techniques for Patent Landscape Analyses", prepared for Global Intellectual Strategies, 16 pages.
• [T1] Dumontier M, Green JR, Golshani A, Smith M.L, Mir-Rashed N, Alamgir Md, Eroukovam V, Dehne F, Cheetham J.J, 2008, "Identifying Significant Features Shared Among Yeast Proteins for Functional Genomics", Nature Precedings, hdl:10101/npre.2008.2311.1, 16 pages.

Data sets

• [D7] Dick K, Tanner J, Green JR, 2022, "Streetlearn Intra-City Geolocation Dataset", Carleton University Dataverse, 1 Mar 2022. (DOI: 10.5683/SP3/DPIIEH)
• [D6] Dick K, Tanner J, Charih F, Green JR, 2022, "Fully Annotated Gas Prices of America Dataset for Multi-Metric Extraction in the Wild", Carleton University Dataverse, 23 Jan 2022. (DOI: 10.5683/SP3/NRGMMB)
• [D5] Dick K, Biggar KK, Green JR, 2020, "Comprehensive Prediction of the SARS-CoV-2 vs. Human Interactome using PIPE4, SPRINT, and PIPE-Sites", Carleton University Dataverse, 23 Mar 2020. (DOI: 10.5683/SP2/JZ77XA)
• [D4] Kyrollos D, Reid B, Dick K, Green JR, 2020, "RPmirDIP Predictions of ~6 Million miRNA-Gene Pairs", Carleton University Dataverse, 24 Feb 2020. (DOI: 10.5683/SP2/LD8JKJ)
• [D3] Dick K, Charih F, Woo J, Green JR, 2020, "Sampled 2048 GPA Images with Annotated Regular Gas Price", Carleton University Dataverse, 10 Feb 2020. (DOI: 10.5683/SP2/KQ6VNG)
• [D2] Dick K, Samanfar B, Green JR, 2019, "Human-HIV1 All-to-All Inter-Species Predictions using PIPE4, SPRINT, SPPS", Carleton University Dataverse, 7 Nov 2019. (DOI: 10.5683/SP2/PVOTRN)
• [D1] Dick K, Charih F, Green JR, 2018, "High Quality Annotations of Power Infrastructure in Rural Ontario", Carleton University Dataverse, 6 Feb 2018. (DOI: 10.5683/SP/0YOVH1)

Invited technical presentations and workshops

• [W23] Green JR, "Machine Learning (ML) Applications in Critical Infrastructure Monitoring", Centre for Energy Advancement through Technological Innovation (CEATI) Virtual Black Sky Hazards Workshop, 40 minutes, Ottawa Ontario, 17 May 2022.
• [W22] Green JR, "Machine Learning for Biomedical Informatics", Project Tech Conferences “Code your future” Youth Conference, 60 minutes, Ottawa Ontario, 26 June 2021.
• [W21] Green JR, "Non-Contact Neonatal Patient Care", InGenius Talks, 60 minutes, Ottawa Ontario, 5 Feb 2020.
• [W20] Green JR, "Machine Learning for Biomedical Informatics", Students in Engineering and Technology (SET) Conference, 90 minutes, Ottawa Ontario, 9 Nov 2019.
• [W19] Green JR, "Reciprocal Perspective: Leveraging Context in Complete Prediction Graphs," Ottawa AI Alliance Workshop, Ottawa Ontario, 20 minutes, 19 Oct 2018.
• [W18] Green JR, "Deep Learning for Identifying Threats to Critical Infrastructure," Meeting of the Energy and Utilities Sector Network (EUSN), Ottawa Ontario, 60 minutes, 15 Nov 2017.
• [W17] Green JR, "Fast and Equitable Grading of Labs and Assignments in Engineering", Teaching Assistant Mentor Workshop Series, Carleton University, 90 minutes, annually 2012-2017.
• [W16] Green JR, "Predicting Rare Events," Data Day 4.0, Carleton University, 29 March 2017.
• [W15] Green JR, "Machine Learning with Class (Imbalance)," CASCON 2016 Evidence-based Analytics Workshop, Markham, Ontario, 1 November 2016.
• [W14] Green JR, "Developing machine learning systems in the presence of class imbalance", Invited Talk, Ottawa Machine Learning Meetup Group, Ottawa, Canada, 30 November 2015.
• [W13] Green JR, "Machine Learning for Bioinformatics in the Face of Class Imbalance", Track Keynote at the World Congress on Medical Physics & Biomedical Engineering, Toronto, Canada, 11 June 2015.
• [W12] Green JR, "Pattern Classification in the Presence of Class Imbalance", Invited Talk, Universidad Central "Marta Abreu" de Las Villas, Santa Clara, Cuba, 5 May 2015.
• [W11] Green JR, "The Future of Assistive Technologies", International Summit on Accessibility, 20 minutes, Ottawa Ontario, 15 July 2014.
• [W10] Green JR, "Creating Assistive Devices Using Machine Vision", FEDTalks Speaker Series, 60 minutes, Ottawa Ontario, 5 March 2014.
• [W9] Green JR, "Exact String Matching on Cell B/E and GPGPU Multi-core Architectures for Computational Mass Spectrometry", CASCON Workshop on Parallel Algorithms for Multi-Core and Many-Core Processors, 30 minutes, Markham Ontario, 2 November 2010.
• [W8] Green JR, "Acceleration of Exact String Matching for Computational Mass Spectrometry", IEEE Computer Society Ottawa Chapter, 90 minutes, Ottawa Ontario, 21 September 2010.
• [W7] Gelowsky T, Marjaba R, Patulea C, Green JR, Marble AE, "An Assistive Device for Visually Impaired Swimmers", CMBEC09, Calgary Alberta, 20-22 May 2009.
• [W6] Green JR, Mahmoud H, Dumontier M, "Towards Real Time Protein Identification using the Cell BE: Modeling Tryptic Digestion on the Cell BE Processor", CASCON 2008, Toronto Ontario, 27-28 October 2008.
• [W5] Green JR and Aitken S, "Fast and Equitable Grading of Labs and Assignments in Science and Engineering", Educational Development Center, Carleton University, 90 minutes, Ottawa Ontario, 2008-2009.
• [W4] Green JR, Knisely W, Aghaei A, "An Extensible Genetic Algorithms Library for the Cell BE Processor", CASCON 2007, Toronto Ontario, 22-25 October 2007.
• [W3] Green JR "Fast and Equitable Grading of Labs and Assignments in Science and Engineering", Educational Development Center, Carleton University, 90 minutes, Ottawa Ontario, 2007-2008, 2010.
• [W2] Green JR, "Discovering protein structure and function via nonlinear system identification", IEEE EMBS Ottawa Chapter, Ottawa Ontario, 23 November 2005.
• [W1] Green JR, "Dynamic nonlinear protein structure prediction", Carleton University, Ottawa Ontario, 10 December 2004.

Posters

• [P25] Klamrowski M et al., “Comparison of Machine Learning with Cox Regression Models for Kidney Failure Prediction among Patients with Advanced CKD,” 67th Annual Meeting of the Canadian Society of Clinical Chemists, Winnipeg, Manitoba, 18-21 June 2023. Awarded the “Canadian Society of Clinical Chemists Best Poster Award - Clinical”.
• [P24] Souley Dosso Y, Aziz S, Nizami S, Sethi N, Samuel JF, Greenwood K, Harrold J, Giffen PR, and Green JR, "Neonatal Motion Detection and Classification from Pressure Sensitive Mat and RGB-D Video Data," CASCON 2019, Markham, Ontario, 4-6 Nov 2019.
• [P23] Nizami S, Souley Dosso Y, Samuel J, Sethi N, Ain QU, Amin R, Basharat A, Giffen PR, Green JR, "Real-Time Dynamic mHealth Applications and Analytics Framework, IBM CAS Project 2019", Data Day, Carleton University, Ottawa, ON, Canada, 26 Mar 2019. First place among ~28 posters.
• [P22] Nizami S, Bekele A, Souley Dosso Y, Samuel JF, Sethi N, Basharat A, Greenwood K, Harrold J, Giffen PR, and Green JR, "Patient Monitoring in the NICU using Pressure Sensitive Mats and Video Analytics," CASCON 2018, Markham, Ontario, 30 Oct - 1 Nov 2018.
• [P21] Nizami S, Bekele A, Souley Dosso Y, Samuel J, Sethi N, Hozayen M, Basharat A, Aubertin C, Greenwood K, Harrold J, Giffen PR, and Green JR, "Patient Monitoring in the NICU using Pressure Sensitive Mats and Video Analysis," Carleton University Life Sciences Research Day, Ottawa, Ontario, 30 May 2018. Received Best Poster Award, among ~25 posters.
• [P20] Nizami S, Bekele A, Souley Dosso Y, Hozayen M, Basharat A, Shoukat A, Hameed U, Raza SA, Aubertin C, Greenwood K, Harrold J, Giffen PR, and Green JR, "Patient Monitoring in the NICU using Pressure Sensitive Mats and Video Analysis," CASCON 2017, Markham, Ontario, 6-8 Nov 2017. (Tied for Best Poster Award, among 75 exhibits)
• [P19] Cohen-MacFarlane M, Green JR, Knoefel F, Goubran RA, "Smart Monitoring of Fluid Intake And Bladder Voiding Using Pressure Sensitive Mats," Life Sciences Research Day, Carleton University, 5 May 2017.
• [P18] Dick K, Green JR, "A Framework for Improving Protein-Protein Interaction Predictions," Life Sciences Research Day, Carleton University, 5 May 2017.
• [P17] Souley Dosso Y, Dick K, Green JR, "Tongue Tracking using Convolutional Neural Networks and Transfer Learning," Life Sciences Research Day, Carleton University, 5 May 2017.
• [P16] Dick K, Souley Dosso Y, Russell L, Green JR, "Deep Learning for Identifying Threats to Critical Infrastructure," Data Day 4.0, Carleton University, 29 March 2017.
• [P15] Castillo-Garit JA, Martínez-López Y, Barigye SJ, Martínez-Santiago O, Marrero-Ponce Y, Green JR, 2017, "Molecular descriptor from atomic weighted vectors to predict aquatic toxicity," MOL2NET 2016 - 2nd International Conference on Multidisciplinary Sciences, 25 Jan 2017.
• [P14] Nizami S, Nofal S, Statchuk C, Aubertin C, Greenwood K, Harrold J, Green JR, "Pressure Sensitive Mats for Patient Monitoring in the NICU," CASCON 2016, Markham, Ontario, 31 October 2016.
• [P13] Nizami S, Green JR, McGregor C, "Detecting Artifacts in Big Physiologic Data to Enhance Clinical Decision Support", Second Annual Data Day, Carleton University, 1 April 2015. (Honorable Mention for Best Poster Competition)
• [P12] Peace R, Green JR, "Species-specific microRNA prediction for elucidation of freeze-tolerance", 2014 Ottawa Hospital Research Institute (OHRI) Research Day, Ottawa ON, 13 Nov 2014.
• [P11] Peace R, Green JR, "MicroRNA prediction for elucidation of freeze-tolerant properties of C. Picta Bellii", First Annual Data Day, Carleton University, 24 April 2014.
• [P10] Ruiz-Blanco Y.B, Martinez E, Marrero-Ponce Y, Green JR, "A Hybrid-meta-heuristic Approach to Search Protein Conformational Space", First Annual Data Day, Carleton University, 24 April 2014.
• [P9] Amos-Binks A, Dehne F, Green JR, "Towards Personalized Interactomes" , First Annual Data Day, Carleton University, 24 April 2014.
• [P8] Schoenrock A, Samanfar B, Hooshyar M, Phillips C.A, Wang H, Pitre S, Omidi K, Gui Y, Alamgir Md, Barrenas F, Benson M, Langston M, Green JR, Dehne F, Golshani A, "On finding overlapping graph complexes, with applications to PPI network analysis", UT-ORNL-KBRIN Bioinformatics Summit, Louisville, KY, March 2012.
• [P7] Peace R, Mahmoud H, Green JR, "Peptide Sequence Tag Identification Using the Cell BE", 2nd Sharcnet Symposium on GPU and Cell Computing, University of Waterloo, 20 May 2009.
• [P6] Mahmoud H, Peace R, Green JR, "Peptide Sequence Tag Identification Using the Cell BE", 2nd Annual Carleton Cell BE Programming Workshop, Carleton University, 13-15 May 2009. (Best Poster Award)
• [P5] Rohra R, Kanagasundaram R, Green JR, "Accelerating Nonlinear System Identification Using the Cell BE Processor", 2nd Annual Carleton Cell BE Programming Workshop, Carleton University, 13-15 May 2009.
• [P4] Gagne R, Williams A, Dong H, Wade M, Green J, Yauk C, "Guidelines for Chip-chip Pre-processing and Analysis", Health Canada Science Forum, Ottawa, 8-9 October 2008. (Best Poster Award)
• [P3] Green JR, Knisely W, Aghaei A, "An Extensible Genetic Algorithms Library for the Cell BE Processor", Cell BE Programming Workshop 2008, Carleton University, 15-16 May 2008.
• [P2] Hamdy M, Belkemah P, Green JR, "Dynamic Nonlinear System Identification on the Cell BE", Cell BE Programming Workshop 2008, Carleton University, 15-16 May 2008.
• [P1] Mahmoud H, Dumontier M, Green JR, "Towards Real Time Protein Identification using the Cell BE", Cell BE Programming Workshop 2008, Carleton University, 15-16 May 2008.

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